Burkholderia Publications

Research on Pathogenesis and Ecology

Bulterys PL, Bulterys MA, Phommasone K, Luangraj M, Mayxay M, Kloprogge S, Miliya T, Vongsouvath M, Newton PN, Phetsouvanh R, French CT, Miller JF, Turner P, Dance DAB. Climatic drivers of melioidosis in Laos and Cambodia: a 16-year case series analysis. Lancet Planet Health. 2018 Aug;2(8):e334-e343. doi: 10.1016/S2542-5196(18)30172-4. PubMed PMID: 30082048. PubMed
 
Li R, Mansukhani ND, Guiney LM, Ji Z, Zhao Y, Chang CH, French CT, Miller JF, Hersam MC, Nel AE, Xia T. Identification and Optimization of Carbon Radicals on Hydrated Graphene Oxide for Ubiquitous Antibacterial Coatings. ACS Nano. 2016 Dec 27;10(12):10966-10980. doi: 10.1021/acsnano.6b05692. PubMed PMID: 28024366. PubMed
 
Toesca IJ, French CT, Miller JF. The Type VI secretion system spike protein VgrG5 mediates membrane fusion during intercellular spread by pseudomallei group Burkholderia species. Infect Immun. 2014 Apr;82(4):1436-44. doi: 10.1128/IAI.01367-13. PubMed PMID: 24421040. PubMed
 
French CT, Panina EM, Yeh SH, Griffith N, Arambula DG, Miller JF. The Bordetella type III secretion system effector BteA contains a conserved N-terminal motif that guides bacterial virulence factors to lipid rafts. Cell Microbiol. 2009 Dec;11(12):1735-49. doi: 10.1111/j.1462-5822.2009.01361.x. PubMed PMID: 19650828. PubMed
 
French CT, Toesca IJ, Wu TH, Teslaa T, Beaty SM, Wong W, Liu M, Schröder I, Chiou PY, Teitell MA, Miller JF. Dissection of the Burkholderia intracellular life cycle using a photothermal nanoblade. Proc Natl Acad Sci U S A. 2011 Jul 19;108(29):12095-100. doi: 10.1073/pnas.1107183108. PubMed PMID: 21730143. PubMed
 
Teh BE, French CT, Chen Y, Chen IG, Wu TH, Sagullo E, Chiou PY, Teitell MA, Miller JF, Gan YH. Type three secretion system-mediated escape of Burkholderia pseudomallei into the host cytosol is critical for the activation of NFκB. BMC Microbiol. 2014 May 6;14:115. doi: 10.1186/1471-2180-14-115. PubMed PMID: 24884837. PubMed
 
Balaji K, French CT, Miller JF, Colicelli J. The RAB5-GEF function of RIN1 regulates multiple steps during Listeria monocytogenes infection. Traffic. 2014 Nov;15(11):1206-18. doi: 10.1111/tra.12204. PubMed PMID: 25082076. PubMed
 
Chen Y, Schröder I, French CT, Jaroszewicz A, Yee XJ, Teh BE, Toesca IJ, Miller JF, Gan YH. Characterization and analysis of the Burkholderia pseudomallei BsaN virulence regulon. BMC Microbiol. 2014 Aug 1;14:206. doi: 10.1186/s12866-014-0206-6. PubMed PMID: 25085508. PubMed
 
Balaji K, French CT, Miller JF, Colicelli J. The RAB5‐GEF Function of RIN1 Regulates Multiple Steps During Listeria monocytogenes Infection. Traffic. 2014 Jul 31;15: 1206-1218. doi:10.1111/tra.12204. Wiley
 
Dybvig K, Sitaraman R, French CT. A family of phase-variable restriction enzymes with differing specificities generated by high-frequency gene rearrangements. Proc Natl Acad Sci U S A. 1998 Nov 10;95(23):13923-8. doi: 10.1073/pnas.95.23.13923. PubMed PMID: 9811902. PubMed
 
Liu L, Dybvig K, Panangala VS, van Santen VL, French CT. GAA trinucleotide repeat region regulates M9/pMGA gene expression in Mycoplasma gallisepticum. Infect Immun. 2000 Feb;68(2):871-6. doi: 10.1128/iai.68.2.871-876.2000. PubMed PMID: 10639457. PubMed
 
Shen X, Gumulak J, Yu H, French CT, Zou N, Dybvig K. Gene rearrangements in the vsa locus of Mycoplasma pulmonis. J Bacteriol. 2000 May;182(10):2900-8. doi: 10.1128/jb.182.10.2900-2908.2000. PubMed PMID: 10781561. PubMed
 
Dybvig K, French CT, Voelker LL. Construction and use of derivatives of transposon Tn4001 that function in Mycoplasma pulmonis and Mycoplasma arthritidis. J Bacteriol. 2000 Aug;182(15):4343-7. doi: 10.1128/jb.182.15.4343-4347.2000. PubMed PMID: 10894746. PubMed
 
Teachman AM, French CT, Yu H, Simmons WL, Dybvig K. Gene transfer in Mycoplasma pulmonis. J Bacteriol. 2002 Feb;184(4):947-51. doi: 10.1128/jb.184.4.947-951.2002. PubMed PMID: 11807054. PubMed
 
Dybvig K, Cao Z, French CT, Yu H. Evidence for type III restriction and modification systems in Mycoplasma pulmonis. J Bacteriol. 2007 Mar;189(6):2197-202. doi: 10.1128/JB.01669-06. PubMed PMID: 17209015. PubMed
 
French CT, Lao P, Loraine AE, Matthews BT, Yu H, Dybvig K. Large-scale transposon mutagenesis of Mycoplasma pulmonis. Mol Microbiol. 2008 Jul;69(1):67-76. doi: 10.1111/j.1365-2958.2008.06262.x. PubMed PMID: 18452587. PubMed
 
Dybvig K, Zuhua C, Lao P, Jordan DS, French CT, Tu AH, Loraine AE. Genome of Mycoplasma arthritidis. Infect Immun. 2008 Sep;76(9):4000-8. doi: 10.1128/IAI.00516-08. PubMed PMID: 18573899. PubMed
 
Wu TH, Teslaa T, Kalim S, French CT, Moghadam S, Wall R, Miller JF, Witte ON, Teitell MA, Chiou PY. Photothermal nanoblade for large cargo delivery into mammalian cells. Anal Chem. 2011 Feb 15;83(4):1321-7. doi: 10.1021/ac102532w. PubMed PMID: 21247066. PubMed
 
Rattiner LM, Davis M, French CT, Ressler KJ. Brain-Derived Neurotrophic Factor and Tyrosine Kinase Receptor B Involvement in Amygdala-Dependent Fear Conditioning. Journal of Neuroscience. 2004 May 19, 24 (20) 4796-4806; DOI:10.1523/JNEUROSCI.5654-03.2004. JNeurosci
 
Nicolaou KC, Namoto K, Ritzén A, Ulven T, Shoji M, Li J, D’Amico G, Liotta D, French CT, Wartmann M, Altmann KH, Giannakakou P. Chemical synthesis and biological evaluation of cis- and trans-12,13-cyclopropyl and 12,13-cyclobutyl epothilones and related pyridine side chain analogues. J. Am. Chem. Soc. 2001 Sep 26;123(38):9313-23. PubMed PMID: 11562214. doi: 10.1021/ja011338b. ACSPub

Roe, C., Williamson, C., Vazquez, A., Kyger, K., Valentine, M., Bowers, J., Phillips, P. D., et al. (2020). Bacterial Genome wide association studies (bGWAS) and transcriptomics identifies cryptic antimicrobial resistance mechanisms in Acinetobacter baumannii. 8, 1–19. doi:10.1101/864462. frontiersin.org
 
Greene, J. R., Merrett, K. L., Heyert, A. J., Simmons, L. F., Migliori, C. M., Vogt, K. C., Castro, R. S., Phillips, P. D., et al. (2019). Scope and efficacy of the broad-spectrum topical antiseptic choline geranate. 1–22. PLOS
 
Bartee, D., Sanders, S., Phillips, P. D., Harrison, M. J., Koppisch, A. T., and Meyers, C. L. F. (2019). Enamide Prodrugs of Acetyl Phosphonate Deoxy- D -xylulose-5- phosphate Synthase Inhibitors as Potent Antibacterial Agents. doi:10.1021/acsinfecdis.8b00307. pubs.acs.org
 
Turner, M. W., Marquart, L. A., Phillips, P. D., and Mcdougal, O. M. (2019). Mutagenesis of α-Conotoxins for Enhancing Activity and Selectivity for Nicotinic Acetylcholine Receptors. doi:10.3390/toxins11020113. mdpi
 
Sanders, S., Bartee, D., Harrison, M. J., Phillips, P. D., Koppisch, A. T., and Freel Meyers, C. L. (2018). Growth medium-dependent antimicrobial activity of early stage MEP pathway inhibitors. PLoS One 13, 1–20. doi:10.1371/journal.pone.0197638. journals.plos.org
 
Daniel Phillips, P., Andersen, T., and M. McDougal, O. (2016). Assessing the utility and limitations of high throughput virtual screening. AIMS Mol. Sci. 3, 238–245. doi:10.3934/molsci.2016.2.238. AIMS Press
 
King, M. D., Phillips, P.strong>, Turner, M. W., Katz, M., Lew, S., Bradburn, S., et al. (2015). Computational Exploration of a Protein Receptor Binding Space with Student Proposed Peptide Ligands w. 63–67. doi:10.1002/bmb.20925. iubmb
 
Fox, D. T., Schmidt, E. N., Tian, H., Dhungana, S., Valentine, M. C., Warrington, N. V, Phillips, P. D., et al. (2014). Sub-Inhibitory Fosmidomycin Exposures Elicits Oxidative Stress in Salmonella enterica Serovar typhimurium LT2. 9. doi:10.1371/journal.pone.0095271. PLOS

Wilcox TM, Zarn KE, Piggot MP, Young MK, McKelvey KS, Schwartz MK. Capture enrichment of aquatic environmental DNA: A first proof of concept. Molecular Ecology Resources. 2018 Nov;18(6):1392-1401. doi: 10.1111/1755-0998.12928. PubMed PMID: 30009542. PubMed
 
Roffler GH, Waite JN, Pilgrim KL, Zarn KE, Schwartz MK. Estimating abundance of a cryptic social carnivore using spatially explicit capture–recapture. Wildlife Society Bulletin. 2019 Mar;43(1):31-41. doi: 10.1002/wsb.953. PubMed PMID: 28120871. NIH
 
Schwartz MK, Walters AD, Pilgrim KL, Moriarty KM, Slauson KM, Zielinski WJ, Aubry KB, Sacks BN, Zarn KE, Quinn CB, Young MK. Pliocene–Early Pleistocene Geological Events Structure Pacific Martens (Martes caurina). Journal of Heredity. 2020 Mar;111(2):169-181. doi: 10.1093/jhered/esaa005. PubMed PMID: 32161974. PubMed